PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010919
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 245aa    MW: 27144.2 Da    PI: 6.5117
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010919genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.3e-29145202260
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           +DgynWrKYGqK v+g+ef+rsYY+Ct  +C +kk+vers+ d+++++i+Y  +H+h+k
  PGSC0003DMP400010919 145 KDGYNWRKYGQKLVRGNEFTRSYYKCTRINCLAKKQVERSQ-DGHITNIHYIAKHEHPK 202
                           7****************************************.***************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.769139203IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-25139203IPR003657WRKY domain
SuperFamilySSF1182903.53E-23142203IPR003657WRKY domain
SMARTSM007744.6E-29144202IPR003657WRKY domain
PfamPF031066.4E-22145201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGVSKDDVSQ SNQEDSSLSN VPEKDTEYVH QKKGPESEGG ASESSRVSVL PKKEPYIISC  60
KSDSPVKDGN ISLVPGKASD SSQQIQSQKM EEVVSQPHQE QVTSSPMAEN ALCKLRSRRN  120
PDMSVQDLPS DKGVTPFSEP EKPSKDGYNW RKYGQKLVRG NEFTRSYYKC TRINCLAKKQ  180
VERSQDGHIT NIHYIAKHEH PKPLNSPQIS PELVVPSEMT QPDMPTETPR EGTQDCPSQL  240
LCSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A1e-121462031977Probable WRKY transcription factor 4
1wj2_A1e-121462031977Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363023.11e-168PREDICTED: probable WRKY transcription factor 20 isoform X1
TrEMBLM1A6I31e-180M1A6I3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000157541e-167(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.28e-27zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]